WABI (REST) ClustalWの仕様 (2009)

service_name	ClustalW service_desc_en	ClustalW is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences. It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. This service might not be executable when servers for the analysis behind the API server are busy. In this case, you will receive the following message: The search and analysis service is very busy now. Please try it again. service_desc_jp	ClustalWは DNAまたはタンパク質を対象にした複数の配列をアライメントするプログラムです. ClustalWは、異なる配列の中から生物学的に重要なマルチプルアライメントを生成します. 与えられた配列に対してアライメントが最も一致するよう計算され、配列の一致度や類似度、異なりが分かるように複数の配列を並べます. サーバの負荷が高い場合、サービスが実行されず以下のメッセージが返されることがあります. The search and analysis service is very busy now. Please try it again. link_en	http://clustalw.ddbj.nig.ac.jp/top-e.html link_jp	http://clustalw.ddbj.nig.ac.jp/top-j.html wsdl	http://xml.nig.ac.jp/wsdl/ClustalW.wsdl method_name	analyzeParam method_desc_en	Execute ClustalW with multiple sequences and parameter. Furthermore, analyzeParam is also provided by the method for retrieving the result asynchronously. method_desc_jp	複数の配列とパラメータを指定して ClustalW を実行します. また、analyzeParamは非同期に結果を取得するためのメソッドも提供しています. param_start	0 param_print_name	query param_inout_name	sequence param_desc_en	query sequence param_desc_jp	クエリー配列 param_example_start param_example	> RABSTOUT  rabbit Guinness receptor param_example	  LKMHLMGHLKMGLKMGLKGMHLMHLKHMHLMTYTYTTYRRWPLWMWLPDFGHAS param_example	  ADSCVCAHGFAVCACFAHFDVCFGAVCFHAVCFAHVCFAAAVCFAVCAC param_example	> MUSNOSE  mouse nose drying factor param_example	   mhkmmhkgmkhmhgmhmhglhmkmhlkmgkhmgkmkytytytryrwtqtqwtwyt param_example	   fdgfdsgafdagfdgfsagdfavdfdvgavfsvfgvdfsvdgvagvfdv param_example	> HSHEAVEN   human Guinness receptor repeat param_example	 mhkmmhkgmkhmhgmhmhg  lhmkmhlkmgkhmgkmk  ytytytryrwtqtqwtwyt param_example	 fdgfdsgafdagfdgfsag  dfavdfdvgavfsvfgv  dfsvdgvagvfdv param_example	 mhkmmhkgmkhmhgmhmhg  lhmkmhlkmgkhmgkmk  ytytytryrwtqtqwtwyt param_example	 fdgfdsgafdagfdgfsag  dfavdfdvgavfsvfgv  dfsvdgvagvfdv param_example_end param_end	0 param_start	1 param_print_name	param param_inout_name	文字列型 param_desc_en	parameter at clustalw execution param_desc_jp	実行パラメータ param_example_start param_example	-align -matrix=blosum -gapdist=8 -maxdiv=40 -outorder=aligned -pwmatrix=blosum param_example_end param_detail_start param_detail	-ALIGN             :do full multiple alignment param_detail	-TREE              :calculate NJ tree. param_detail	-BOOTSTRAP(=n)     :bootstrap a NJ tree (n= number of bootstraps; def. = 1000). param_detail param_detail	               PARAMETERS (set things) param_detail param_detail	***General settings:**** param_detail	-QUICKTREE  :use FAST algorithm for the alignment guide tree param_detail	-TYPE=      :PROTEIN or DNA sequences param_detail	-OUTPUT=    :GCG, GDE, PHYLIP, PIR or NEXUS param_detail	-OUTORDER=  :INPUT or ALIGNED param_detail	-SEQNO_RANGE=:OFF or ON (NEW: for all output formats) param_detail	-RANGE=m,n  :sequence range to write starting m to m+n. param_detail param_detail	***Fast Pairwise Alignments:*** param_detail	-KTUPLE=n   :word size param_detail	-TOPDIAGS=n :number of best diags. param_detail	-WINDOW=n   :window around best diags. param_detail	-PAIRGAP=n  :gap penalty param_detail	-SCORE      :PERCENT or ABSOLUTE param_detail param_detail param_detail	***Slow Pairwise Alignments:*** param_detail	-PWMATRIX=   :Protein weight matrix=BLOSUM, PAM, GONNET, ID or filename param_detail	-PWGAPOPEN=f :gap opening penalty param_detail	-PWGAPEXT=f  :gap opening penalty param_detail param_detail param_detail	***Multiple Alignments:*** param_detail	-MATRIX=      :Protein weight matrix=BLOSUM, PAM, GONNET, ID or filename param_detail	-GAPOPEN=f    :gap opening penalty param_detail	-GAPEXT=f     :gap extension penalty param_detail	-ENDGAPS      :no end gap separation pen. param_detail	-GAPDIST=n    :gap separation pen. range param_detail	-NOHGAP       :hydrophilic gaps off param_detail	-MAXDIV=n     :% ident. for delay param_detail	-TYPE=        :PROTEIN or DNA param_detail param_detail param_detail	***Trees:*** param_detail	-OUTPUTTREE=nj OR phylip OR dist OR nexus param_detail	-SEED=n       :seed number for bootstraps. param_detail	-KIMURA       :use Kimura's correction. param_detail param_detail	***DDBJ Original Option:*** param_detail	-DOTSINOUTPUT :Use dots in output.(Effective only with -ALIGN option) param_detail	-T_DISTANCE= : kimura OR jukes_cantor OR tamura OR tajima_nei OR gojobori param_detail	              OR tamura_nei (Effective only with -TYPE=dna) param_detail	-B_DISTANCE= : kimura OR jukes_cantor OR tamura OR tajima_nei OR gojobori param_detail	              OR tamura_nei (Effective only with -TYPE=dna) param_detail_end param_end	1 result_format_en	ClustalW result result_format_jp	ClustalW の実行結果 result_inout_name	文字列型 method_name	analyzeParamAsync method_desc_en	Execute ClustalW asynchronously with multiple sequences and parameter and get the request ID for retrieving the result afterwards. method_desc_jp	非同期に複数の配列とパラメータを指定して ClustalW を実行し、実行後しばらくしてから結果を取得するためのリクエストIDを取得します. param_start	0 param_print_name	query param_inout_name	sequence param_desc_en	query sequence param_desc_jp	クエリー配列 param_example_start param_example	> RABSTOUT  rabbit Guinness receptor param_example	  LKMHLMGHLKMGLKMGLKGMHLMHLKHMHLMTYTYTTYRRWPLWMWLPDFGHAS param_example	  ADSCVCAHGFAVCACFAHFDVCFGAVCFHAVCFAHVCFAAAVCFAVCAC param_example	> MUSNOSE  mouse nose drying factor param_example	   mhkmmhkgmkhmhgmhmhglhmkmhlkmgkhmgkmkytytytryrwtqtqwtwyt param_example	   fdgfdsgafdagfdgfsagdfavdfdvgavfsvfgvdfsvdgvagvfdv param_example	> HSHEAVEN   human Guinness receptor repeat param_example	 mhkmmhkgmkhmhgmhmhg  lhmkmhlkmgkhmgkmk  ytytytryrwtqtqwtwyt param_example	 fdgfdsgafdagfdgfsag  dfavdfdvgavfsvfgv  dfsvdgvagvfdv param_example	 mhkmmhkgmkhmhgmhmhg  lhmkmhlkmgkhmgkmk  ytytytryrwtqtqwtwyt param_example	 fdgfdsgafdagfdgfsag  dfavdfdvgavfsvfgv  dfsvdgvagvfdv param_example_end param_end	0 param_start	1 param_print_name	param param_inout_name	文字列型 param_desc_en	parameter at clustalw execution param_desc_jp	実行パラメータ param_example_start param_example	-align -matrix=blosum -gapdist=8 -maxdiv=40 -outorder=aligned -pwmatrix=blosum param_example_end param_detail_start param_detail	-ALIGN             :do full multiple alignment param_detail	-TREE              :calculate NJ tree. param_detail	-BOOTSTRAP(=n)     :bootstrap a NJ tree (n= number of bootstraps; def. = 1000). param_detail param_detail	               PARAMETERS (set things) param_detail param_detail	***General settings:**** param_detail	-QUICKTREE  :use FAST algorithm for the alignment guide tree param_detail	-TYPE=      :PROTEIN or DNA sequences param_detail	-OUTPUT=    :GCG, GDE, PHYLIP, PIR or NEXUS param_detail	-OUTORDER=  :INPUT or ALIGNED param_detail	-SEQNO_RANGE=:OFF or ON (NEW: for all output formats) param_detail	-RANGE=m,n  :sequence range to write starting m to m+n. param_detail param_detail	***Fast Pairwise Alignments:*** param_detail	-KTUPLE=n   :word size param_detail	-TOPDIAGS=n :number of best diags. param_detail	-WINDOW=n   :window around best diags. param_detail	-PAIRGAP=n  :gap penalty param_detail	-SCORE      :PERCENT or ABSOLUTE param_detail param_detail param_detail	***Slow Pairwise Alignments:*** param_detail	-PWMATRIX=   :Protein weight matrix=BLOSUM, PAM, GONNET, ID or filename param_detail	-PWGAPOPEN=f :gap opening penalty param_detail	-PWGAPEXT=f  :gap opening penalty param_detail param_detail param_detail	***Multiple Alignments:*** param_detail	-MATRIX=      :Protein weight matrix=BLOSUM, PAM, GONNET, ID or filename param_detail	-GAPOPEN=f    :gap opening penalty param_detail	-GAPEXT=f     :gap extension penalty param_detail	-ENDGAPS      :no end gap separation pen. param_detail	-GAPDIST=n    :gap separation pen. range param_detail	-NOHGAP       :hydrophilic gaps off param_detail	-MAXDIV=n     :% ident. for delay param_detail	-TYPE=        :PROTEIN or DNA param_detail param_detail param_detail	***Trees:*** param_detail	-OUTPUTTREE=nj OR phylip OR dist OR nexus param_detail	-SEED=n       :seed number for bootstraps. param_detail	-KIMURA       :use Kimura's correction. param_detail param_detail	***DDBJ Original Option:*** param_detail	-DOTSINOUTPUT :Use dots in output.(Effective only with -ALIGN option) param_detail	-T_DISTANCE= : kimura OR jukes_cantor OR tamura OR tajima_nei OR gojobori param_detail	              OR tamura_nei (Effective only with -TYPE=dna) param_detail	-B_DISTANCE= : kimura OR jukes_cantor OR tamura OR tajima_nei OR gojobori param_detail	              OR tamura_nei (Effective only with -TYPE=dna) param_detail_end param_end	1 result_format_en	Request ID which is used for getting the result by RequestManager afterwards. result_format_jp	後ほど、RequestManager で結果を取得するためのリクエストIDが返されます. result_inout_name	文字列型 method_name	analyzeSimple method_desc_en	Execute ClustalW with multiple sequences. Furthermore, analyzeSimple is also provided by the method for retrieving the result asynchronously. method_desc_jp	複数の配列を指定して ClustalW を実行します. また、analyzeSimple は非同期に結果を取得するためのメソッドも提供しています. param_start	0 param_print_name	query param_inout_name	sequence param_desc_en	query sequence param_desc_jp	クエリー配列 param_example_start param_example	> RABSTOUT  rabbit Guinness receptor param_example	  LKMHLMGHLKMGLKMGLKGMHLMHLKHMHLMTYTYTTYRRWPLWMWLPDFGHAS param_example	  ADSCVCAHGFAVCACFAHFDVCFGAVCFHAVCFAHVCFAAAVCFAVCAC param_example	> MUSNOSE  mouse nose drying factor param_example	   mhkmmhkgmkhmhgmhmhglhmkmhlkmgkhmgkmkytytytryrwtqtqwtwyt param_example	   fdgfdsgafdagfdgfsagdfavdfdvgavfsvfgvdfsvdgvagvfdv param_example	> HSHEAVEN   human Guinness receptor repeat param_example	 mhkmmhkgmkhmhgmhmhg  lhmkmhlkmgkhmgkmk  ytytytryrwtqtqwtwyt param_example	 fdgfdsgafdagfdgfsag  dfavdfdvgavfsvfgv  dfsvdgvagvfdv param_example	 mhkmmhkgmkhmhgmhmhg  lhmkmhlkmgkhmgkmk  ytytytryrwtqtqwtwyt param_example	 fdgfdsgafdagfdgfsag  dfavdfdvgavfsvfgv  dfsvdgvagvfdv param_example_end param_end	0 result_format_en	ClustalW result result_format_jp	ClustalW 実行結果 result_inout_name	文字列型 method_name	analyzeSimpleAsync method_desc_en	Execute ClustalW asynchronously with multiple sequences and get the request ID for retrieving the result afterwards. method_desc_jp	非同期に複数の配列を指定して ClustalW を実行し、実行後しばらくしてから結果を取得するためのリクエストIDを取得します. param_start	0 param_print_name	query param_inout_name	sequence param_desc_en	query sequence param_desc_jp	クエリー配列 param_example_start param_example	> RABSTOUT  rabbit Guinness receptor param_example	  LKMHLMGHLKMGLKMGLKGMHLMHLKHMHLMTYTYTTYRRWPLWMWLPDFGHAS param_example	  ADSCVCAHGFAVCACFAHFDVCFGAVCFHAVCFAHVCFAAAVCFAVCAC param_example	> MUSNOSE  mouse nose drying factor param_example	   mhkmmhkgmkhmhgmhmhglhmkmhlkmgkhmgkmkytytytryrwtqtqwtwyt param_example	   fdgfdsgafdagfdgfsagdfavdfdvgavfsvfgvdfsvdgvagvfdv param_example	> HSHEAVEN   human Guinness receptor repeat param_example	 mhkmmhkgmkhmhgmhmhg  lhmkmhlkmgkhmgkmk  ytytytryrwtqtqwtwyt param_example	 fdgfdsgafdagfdgfsag  dfavdfdvgavfsvfgv  dfsvdgvagvfdv param_example	 mhkmmhkgmkhmhgmhmhg  lhmkmhlkmgkhmgkmk  ytytytryrwtqtqwtwyt param_example	 fdgfdsgafdagfdgfsag  dfavdfdvgavfsvfgv  dfsvdgvagvfdv param_example_end param_end	0 result_format_en	Request ID which is used for getting the result by RequestManager afterwards. result_format_jp	後ほど、RequestManager で結果を取得するためのリクエストIDが返されます. result_inout_name	文字列型