Metadata example

=Header and General metadata for all hybridaization=

CIBEX accession	CBX4 Release date	2005-03-03

Experiment: Experiment title	Dependability of Inhalation Anesthesia Assessed by Comprehensive Gene Expression Profiling Experimental design type	time_series_design, organism_part_comparison_design Experimental factor	organism_part, inhalation anesthesia Common reference	yes Quality control description Number of hybridization	130 Experimental description	Although general anesthesia is routinely used as an essential surgical procedure and its harmlessness has been evaluated and endorsed by clinical outcomes, little is known its comprehensive influence not reflected into mortality and morbidity. Here we show that inhalation anesthesia significantly affected expression of less than 1.5% of over 10,000 genes by analyzing expression profiles for multiple organs of rats under anesthesia with sevoflurane. The small number of transcripts affected by the inhalation anesthesia comprised those specific to single and common in pleural organs. The former included genes mainly associated with metabolism, a vasoconstrictor, endothelin 1, in the lungs and genes whose expression is influenced by agents such as amphetamine in the brain. The latter contained multiple circadian genes previously identified, including novel candidates. In the brain we failed to detect alteration of the clock gene expression except Per2 whose expression pattern was contradictory to the previous findings, assuming that inhalation anesthesia perturbs circadian rhythms in the central nervous system. Our findings provide the first assessment for dependability of inhalation anesthesia by approaches of experimental biology and genome science.

Submitter: First name	Sakamoto Last name	Atsuhiro Organization	Nippon Medical School

First name	Imai Last name	Jun-ichi Organization	Tokyo Medical and Dental University, Medicrome, Inc.--

First name	Nishikawa Last name	Akira Organization	Medicrome, Inc., NIPPON GENE, CO.

First name	Honma Last name	Reiko Organization	Tokyo Medical and Dental University

First name	Ito Last name	Emi Organization	Tokyo Medical and Dental University

First name	Yanagisawa Last name	Yuka Organization	Tokyo Medical and Dental University

First name	Kawamura Last name	Mika Organization	Medicrome, Inc.

First name	Ogawa Last name	Ryo Organization	Nippon Medical School

First name	Watanabe Last name	Shinya Organization	Tokyo Medical and Dental University

Protocol: Name	growth condition protocol Description	Six-week-old male rats (Wister; Charles River Laboratory) were purchased and adapted to a 12-h light/12-h dark cycle starting at 6:00 and 18:00 for a week before experiments. An anesthesia experiment was reproduced twice with a several weeks&#8217; interval. Rats were housed in a plastic box supplied with sevoflurane (4.5%)-air mixture gas of at the rate of 6 L/min. As a 0-h control, rats immediately after induction of anesthesia were subjected to tracheal intubation to keep the anesthetic status and sacrificed to obtain brain, heart, lungs, liver, spleen, blood and kidney. Similarly, rats were sacrificed to obtain the organs after anesthesia for 2 h and 6 h.

Name	in-vivo treatment protocol Description	Rats were housed in a plastic box supplied with sevoflurane (4.5%)-air mixture gas of at the rate of 6 L/min. As a 0-h control, rats immediately after induction of anesthesia were subjected to tracheal intubation to keep the anesthetic status and sacrificed to obtain brain, heart, lungs, liver, spleen, blood and kidney. Similarly, rats were sacrificed to obtain the organs after anesthesia for 2 h and 6 h.

Name	extraction protocol Description	The obtained blood was immediately mixed together with an ISOGEN-LS reagent (NIPPON GENE, Tokyo, Japan) after dilution with an equal volume of water. The obtained solid organs were immediately frozen in liquid nitrogen and lysed with an ISOGEN reagent (NIPPON GENE). Total RNA was prepared from the lysate according to the manufacturer&#8217;s instructions. Poly(A)+ RNA was prepared from total RNA with a Poly(A)Purist Kit (Ambion, TX, USA), according to the manufacturer&#8217;s instructions.

Name	labeling and hybridization protocol Description	Labeling, hybridization and subsequent washes of microarrays were performed with a Labeling & Hybridization Kit (MicroDiagnostic), according to the manufacturer&#8217;s instructions.

Name	measurement protocol Description	Hybridization signals were measured with a GenePix 400A scanner (Axon Instruments, CA, USA) and then processed into primary expression ratios ([Cyanine 5-intensity obtained from each sample]/[Cyanine 3-intensity obtained from the rat common reference RNA]) after normalization by a GenePix Pro. software (Axon Instruments).

Name	transformation protocol Description	Data processing and subsequent hierarchical clustering analysis were performed with an Excel program (Microsoft, WA, USA) and an MDI gene expression analysis software package (MicroDiagnostic). The primary expression ratios were converted into log2 values (log2 Cyanine-5 intensity/Cyanine-3 intensity)(designated log ratios) and compiled into a matrix (designated primary data matrix).

Name	array design protocol Description	A set of synthetic polynucleotides (80-mers) representing 11,464 rat transcripts derived from 10,490 independent genes including most of the RefSeq clones deposited in the NCBI database (MicroDiagnostic, Tokyo, Japan) was arrayed on a slide glass (S9115; Matsunami, Kishiwada, Japan) with a custom-made arrayer.

Array design: Array sesign accession	CAR4 Model name	custom made Design provider	Original Reporter type	A set of synthetic polynucleotides (80-mers) Strand type	single stranded Substrate type	glass Array design protocol	array design protocol File	ArrayDesign.txt

Array design text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks). ACC	Accession number 80Base Sequence	80Base Sequence

=Metadata for each hybridization= Sample: Name	rat_blood_anesthesia_0H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	blood Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_blood_anesthesia_2H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	blood Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_blood_anesthesia_6H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	blood Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_liver_anesthesia_0H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	liver Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_liver_anesthesia_2H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	liver Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_liver_anesthesia_6H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	liver Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_kidney_anesthesia_0H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	kidney Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_kidney_anesthesia_2H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	kidney Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_kidney_anesthesia_6H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	kidney Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_brain_anesthesia_0H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	brain Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_brain_anesthesia_2H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	brain Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_brain_anesthesia_6H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	brain Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_lung_anesthesia_0H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	lung Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_lung_anesthesia_2H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	lung Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_lung_anesthesia_6H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	lung Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_spleen_anesthesia_0H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	spleen Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_spleen_anesthesia_2H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	spleen Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_spleen_anesthesia_6H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	spleen Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_heart_anesthesia_0H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	heart Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_heart_anesthesia_2H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	heart Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	rat_heart_anesthesia_6H Organism	Rattus norvegicus Biosource provider	Charles River Laboratory Sex	male Age	7 weeks Organism part	heart Disease state	normal Growth condition protocol	growth condition protocol Treatment protocol	in-vivo treatment protocol

Name	Rat Reference Organism	Rattus norvegicus Biosource provider	Medicrome Treatment protocol	in-vivo treatment protocol

Labeled Extract: Label	rat_blood_anesthesia_0H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_blood_anesthesia_2H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_blood_anesthesia_6H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_liver_anesthesia_0H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_liver_anesthesia_2H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_liver_anesthesia_6H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_kidney_anesthesia_0H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_kidney_anesthesia_2H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_kidney_anesthesia_6H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_brain_anesthesia_0H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_brain_anesthesia_2H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_brain_anesthesia_6H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_lung_anesthesia_0H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_lung_anesthesia_2H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_lung_anesthesia_6H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_spleen_anesthesia_0H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_spleen_anesthesia_2H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_spleen_anesthesia_6H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_heart_anesthesia_0H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_heart_anesthesia_2H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	rat_heart_anesthesia_6H, Cy5 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy5

Label	Rat Reference, Cy3 Labeling protocol	labeling and hybridization protocol Extraction protocol	extraction protocol Label compound	Cy3

Hybridization: Name	blood1(0H-1) Array design accession	CAR4 File	blood1(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood1(0H-2) Array design accession	CAR4 File	blood1(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood1(0H-3) Array design accession	CAR4 File	blood1(0H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood1(2H-1) Array design accession	CAR4 File	blood1(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood1(2H-2) Array design accession	CAR4 File	blood1(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood1(6H-1) Array design accession	CAR4 File	blood1(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood1(6H-2) Array design accession	CAR4 File	blood1(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood1(6H-3) Array design accession	CAR4 File	blood1(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood2(0H-1) Array design accession	CAR4 File	blood2(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood2(0H-2) Array design accession	CAR4 File	blood2(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood2(0H-3) Array design accession	CAR4 File	blood2(0H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood2(0H-4) Array design accession	CAR4 File	blood2(0H-4).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood2(2H-1) Array design accession	CAR4 File	blood2(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood2(2H-2) Array design accession	CAR4 File	blood2(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood2(2H-3) Array design accession	CAR4 File	blood2(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood2(6H-1) Array design accession	CAR4 File	blood2(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood2(6H-2) Array design accession	CAR4 File	blood2(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	blood2(6H-3) Array design accession	CAR4 File	blood2(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain1(0H-1) Array design accession	CAR4 File	brain1(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain1(0H-2) Array design accession	CAR4 File	brain1(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain1(0H-3) Array design accession	CAR4 File	brain1(0H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain1(2H-1) Array design accession	CAR4 File	brain1(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain1(2H-2) Array design accession	CAR4 File	brain1(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain1(2H-3) Array design accession	CAR4 File	brain1(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain1(6H-1) Array design accession	CAR4 File	brain1(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain1(6H-2) Array design accession	CAR4 File	brain1(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain1(6H-3) Array design accession	CAR4 File	brain1(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain2(0H-1) Array design accession	CAR4 File	brain2(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain2(0H-2) Array design accession	CAR4 File	brain2(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain2(0H-3) Array design accession	CAR4 File	brain2(0H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain2(0H-4) Array design accession	CAR4 File	brain2(0H-4).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain2(2H-1) Array design accession	CAR4 File	brain2(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain2(2H-2) Array design accession	CAR4 File	brain2(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain2(2H-3) Array design accession	CAR4 File	brain2(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain2(6H-1) Array design accession	CAR4 File	brain2(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain2(6H-2) Array design accession	CAR4 File	brain2(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	brain2(6H-3) Array design accession	CAR4 File	brain2(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart1(0H-1) Array design accession	CAR4 File	heart1(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart1(0H-2) Array design accession	CAR4 File	heart1(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart1(0H-3) Array design accession	CAR4 File	heart1(0H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart1(2H-1) Array design accession	CAR4 File	heart1(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart1(2H-2) Array design accession	CAR4 File	heart1(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart1(2H-3) Array design accession	CAR4 File	heart1(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart1(6H-1) Array design accession	CAR4 File	heart1(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart1(6H-2) Array design accession	CAR4 File	heart1(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart1(6H-3) Array design accession	CAR4 File	heart1(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart2(0H-1) Array design accession	CAR4 File	heart2(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart2(0H-2) Array design accession	CAR4 File	heart2(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart2(0H-3) Array design accession	CAR4 File	heart2(0H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart2(0H-4) Array design accession	CAR4 File	heart2(0H-4).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart2(2H-1) Array design accession	CAR4 File	heart2(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart2(2H-2) Array design accession	CAR4 File	heart2(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart2(2H-3) Array design accession	CAR4 File	heart2(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart2(6H-1) Array design accession	CAR4 File	heart2(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart2(6H-2) Array design accession	CAR4 File	heart2(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	heart2(6H-3) Array design accession	CAR4 File	heart2(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney1(0H-1) Array design accession	CAR4 File	kidney1(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney1(0H-2) Array design accession	CAR4 File	kidney1(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney1(0H-3) Array design accession	CAR4 File	kidney1(0H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney1(2H-1) Array design accession	CAR4 File	kidney1(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney1(2H-2) Array design accession	CAR4 File	kidney1(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney1(2H-3) Array design accession	CAR4 File	kidney1(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney1(6H-1) Array design accession	CAR4 File	kidney1(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney1(6H-2) Array design accession	CAR4 File	kidney1(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney1(6H-3) Array design accession	CAR4 File	kidney1(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney2(0H-1) Array design accession	CAR4 File	kidney2(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney2(0H-2) Array design accession	CAR4 File	kidney2(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney2(0H-3) Array design accession	CAR4 File	kidney2(0H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney2(0H-4) Array design accession	CAR4 File	kidney2(0H-4).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney2(2H-1) Array design accession	CAR4 File	kidney2(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney2(2H-2) Array design accession	CAR4 File	kidney2(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney2(2H-3) Array design accession	CAR4 File	kidney2(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney2(6H-1) Array design accession	CAR4 File	kidney2(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney2(6H-2) Array design accession	CAR4 File	kidney2(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	kidney2(6H-3) Array design accession	CAR4 File	kidney2(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver1(0H-1) Array design accession	CAR4 File	liver1(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver1(0H-2) Array design accession	CAR4 File	liver1(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver1(0H-3) Array design accession	CAR4 File	liver1(0H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver1(2H-1) Array design accession	CAR4 File	liver1(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver1(2H-2) Array design accession	CAR4 File	liver1(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver1(2H-3) Array design accession	CAR4 File	liver1(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver1(6H-1) Array design accession	CAR4 File	liver1(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver1(6H-2) Array design accession	CAR4 File	liver1(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver1(6H-3) Array design accession	CAR4 File	liver1(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver2(0H-1) Array design accession	CAR4 File	liver2(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver2(0H-2) Array design accession	CAR4 File	liver2(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver2(0H-4) Array design accession	CAR4 File	liver2(0H-4).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver2(2H-1) Array design accession	CAR4 File	liver2(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver2(2H-2) Array design accession	CAR4 File	liver2(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver2(2H-3) Array design accession	CAR4 File	liver2(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver2(6H-1) Array design accession	CAR4 File	liver2(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver2(6H-2) Array design accession	CAR4 File	liver2(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	liver2(6H-3) Array design accession	CAR4 File	liver2(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung1(0H-1) Array design accession	CAR4 File	lung1(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung1(0H-2) Array design accession	CAR4 File	lung1(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung1(0H-3) Array design accession	CAR4 File	lung1(0H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung1(2H-1) Array design accession	CAR4 File	lung1(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung1(2H-2) Array design accession	CAR4 File	lung1(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung1(2H-3) Array design accession	CAR4 File	lung1(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung1(6H-1) Array design accession	CAR4 File	lung1(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung1(6H-2) Array design accession	CAR4 File	lung1(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung1(6H-3) Array design accession	CAR4 File	lung1(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung2(0H-1) Array design accession	CAR4 File	lung2(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung2(0H-2) Array design accession	CAR4 File	lung2(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung2(0H-4) Array design accession	CAR4 File	lung2(0H-4).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung2(2H-1) Array design accession	CAR4 File	lung2(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung2(2H-2) Array design accession	CAR4 File	lung2(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung2(2H-3) Array design accession	CAR4 File	lung2(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung2(6H-1) Array design accession	CAR4 File	lung2(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung2(6H-2) Array design accession	CAR4 File	lung2(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	lung2(6H-3) Array design accession	CAR4 File	lung2(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen1(0H-1) Array design accession	CAR4 File	spleen1(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen1(0H-2) Array design accession	CAR4 File	spleen1(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen1(0H-3) Array design accession	CAR4 File	spleen1(0H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen1(2H-1) Array design accession	CAR4 File	spleen1(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen1(2H-2) Array design accession	CAR4 File	spleen1(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen1(2H-3) Array design accession	CAR4 File	spleen1(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen1(6H-1) Array design accession	CAR4 File	spleen1(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen1(6H-2) Array design accession	CAR4 File	spleen1(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen1(6H-3) Array design accession	CAR4 File	spleen1(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen2(0H-1) Array design accession	CAR4 File	spleen2(0H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen2(0H-2) Array design accession	CAR4 File	spleen2(0H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen2(0H-3) Array design accession	CAR4 File	spleen2(0H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen2(0H-4) Array design accession	CAR4 File	spleen2(0H-4).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen2(2H-1) Array design accession	CAR4 File	spleen2(2H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen2(2H-2) Array design accession	CAR4 File	spleen2(2H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen2(2H-3) Array design accession	CAR4 File	spleen2(2H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen2(6H-1) Array design accession	CAR4 File	spleen2(6H-1).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen2(6H-2) Array design accession	CAR4 File	spleen2(6H-2).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Name	spleen2(6H-3) Array design accession	CAR4 File	spleen2(6H-3).txt

Hybridization data text field: Field	Description Block	the block number of the feature. Column	the column number of the feature. Row	the row number of the feature. Name	&quot;the name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; ID	&quot;the unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).&quot; X	&quot;the X-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Y	&quot;the Y-coordinate in ?m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.&quot; Dia. the diameter in ?m of the feature-indicator. F635 Median	median feature pixel intensity at wavelength #1 (635 nm). F635 Mean	mean feature pixel intensity at wavelength #1 (635 nm). F635 SD	the standard deviation of the feature pixel intensity at wavelength #1 (635 nm). B635 Median	the median feature background intensity at wavelength #1 (635 nm). B635 Mean	the mean feature background intensity at wavelength #1 (635 nm). B635 SD	the standard deviation of the feature background intensity at wavelength #1 (635 nm). % > B635 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).&quot; % > B635 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).&quot; F635 % Sat. the percentage of feature pixels at wavelength #1 that are saturated. F532 Median	median feature pixel intensity at wavelength #2 (532 nm). F532 Mean	mean feature pixel intensity at wavelength #2 (532 nm). F532 SD	the standard deviation of the feature intensity at wavelength #2 (532 nm). B532 Median	the median feature background intensity at wavelength #2 (532 nm). B532 Mean	the mean feature background intensity at wavelength #2 (532 nm). B532 SD	the standard deviation of the feature background intensity at wavelength #2 (532 nm). % > B532 + 1 SD	&quot;the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).&quot; % > B532 + 2 SD	&quot;the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).&quot; F532 % Sat. the percentage of feature pixels at wavelength #2 that are saturated. Ratio of Medians	&quot;the ratio of the median intensities of each feature for each wavelength, with the median background subtracted.&quot; Ratio of Means	&quot;the ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.&quot; Median of Ratios	&quot;the median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Mean of Ratios	&quot;the geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.&quot; Ratios SD	the geometric standard deviation of the pixel intensity ratios. Rgn Ratio	the regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature. Rgn R? the coefficient of determination for the current regression value. F Pixels	the total number of feature pixels. B Pixels	the total number of background pixels. Sum of Medians	&quot;the sum of the median intensities for each wavelength, with the median background subtracted.&quot; Sum of Means	&quot;the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.&quot; Log Ratio	log (base 2) transform of the ratio of the medians. Flags	the type of flag associated with a feature. Normalize	the normalization status of the feature (included/not included). F1 Median - B1	the median feature pixel intensity at wavelength #1 with the median background subtracted. F2 Median - B2	the median feature pixel intensity at wavelength #2 with the median background subtracted. F1 Mean - B1	the mean feature pixel intensity at wavelength #1 with the median background subtracted. F2 Mean - B2	the mean feature pixel intensity at wavelength #2 with the median background subtracted. SNR 1	&quot;the signal-to-noise ratio at wavelength #1, defined by (Mean Foreground 1- Mean Background 1) / (Standard deviation of Background 1)&quot; F1 Total Intensity	the sum of feature pixel intensities at wavelength #1 Index	the number of the feature as it occurs on the array. &quot;&quot;&quot;User Defined&quot;&quot;&quot;	user-defined feature data read from the GAL file (GenePix Pro 4.1).

Summary: Name	Sakamoto_SI_Table1 Description	including gene names, accession numbers, the nucleotide sequence printed on microarrays and relative log ratios. File	Sakamoto_SI_Table1.txt

Summary data text field: Field	Description Name Accession 80Base Sequence lung1(2H-1) lung1(2H-2) lung1(0H-3) lung1(0H-1) lung1(0H-2) lung1(2H-3) lung1(6H-2) lung1(6H-3) lung1(6H-1) lung2(2H-1) lung2(2H-2) lung2(0H-4) lung2(2H-3) lung2(0H-2) lung2(6H-2) lung2(6H-3) lung2(6H-1) lung2(0H-1) spleen2(6H-1) spleen2(6H-2) spleen2(6H-3) spleen2(2H-3) spleen2(0H-3) spleen2(0H-1) spleen2(0H-2) spleen1(0H-3) spleen1(6H-3) spleen1(0H-2) spleen1(2H-2) spleen1(2H-3) spleen1(6H-1) spleen1(0H-1) spleen1(6H-2) spleen1(2H-1) spleen2(0H-4) spleen2(2H-2) spleen2(2H-1) heart1(6H-2) heart1(6H-3) heart1(6H-1) heart1(2H-2) heart1(2H-3) heart1(0H-2) heart1(0H-3) heart1(0H-1) heart1(2H-1) heart2(2H-3) heart2(6H-2) heart2(2H-2) heart2(6H-3) heart2(0H-1) heart2(0H-2) heart2(0H-3) heart2(0H-4) heart2(2H-1) heart2(6H-1) kidney1(6H-1) kidney1(6H-2) kidney1(2H-1) kidney1(0H-1) kidney1(0H-3) kidney1(2H-3) kidney1(0H-2) kidney2(0H-3) kidney2(2H-1) kidney2(2H-2) kidney2(2H-3) kidney2(0H-4) kidney2(6H-1) kidney2(6H-2) kidney2(6H-3) kidney2(0H-1) kidney2(0H-2) kidney1(6H-3) kidney1(2H-2) brain1(0H-3) brain1(2H-1) brain1(0H-2) brain1(6H-2) brain1(2H-3) brain1(6H-3) brain1(2H-2) brain1(6H-1) brain2(2H-1) brain2(2H-2) brain2(0H-2) brain2(0H-3) brain2(0H-1) brain2(2H-3) brain2(6H-2) brain2(0H-4) brain1(0H-1) brain2(6H-1) brain2(6H-3) liver1(0H-2) liver1(0H-3) liver1(0H-1) liver1(2H-1) liver1(2H-2) liver1(2H-3) liver1(6H-2) liver1(6H-3) liver1(6H-1) liver2(2H-2) liver2(2H-3) liver2(2H-1) liver2(0H-2) liver2(0H-4) liver2(6H-1) liver2(6H-2) liver2(0H-1) liver2(6H-3) blood1(0H-2) blood1(2H-1) blood1(0H-1) blood1(0H-3) blood1(2H-2) blood1(6H-3) blood1(6H-2) blood1(6H-1) blood2(0H-4) blood2(0H-3) blood2(6H-1) blood2(2H-1) blood2(6H-2) blood2(2H-2) blood2(6H-3) blood2(0H-2) blood2(2H-3) blood2(0H-1)

Name	Sakamoto_SI_Table2 Description	including gene names, accession numbers and relative log ratios. File	Sakamoto_SI_Table2.txt

Summary data text field: Field	Description Name ID blood1(0H-1) blood1(0H-2) blood1(0H-3) blood2(0H-1) blood2(0H-2) blood2(0H-3) blood2(0H-4) blood1(2H-1) blood1(2H-2) blood2(2H-1) blood2(2H-2) blood2(2H-3) blood1(6H-1) blood1(6H-2) blood1(6H-3) blood2(6H-1) blood2(6H-2) blood2(6H-3) brain1(0H-1) brain1(0H-2) brain1(0H-3) brain2(0H-1) brain2(0H-2) brain2(0H-3) brain2(0H-4) brain1(2H-1) brain1(2H-2) brain1(2H-3) brain2(2H-1) brain2(2H-2) brain2(2H-3) brain1(6H-1) brain1(6H-2) brain1(6H-3) brain2(6H-1) brain2(6H-2) brain2(6H-3) heart1(0H-1) heart1(0H-2) heart1(0H-3) heart2(0H-1) heart2(0H-2) heart2(0H-3) heart2(0H-4) heart1(2H-1) heart1(2H-2) heart1(2H-3) heart2(2H-1) heart2(2H-2) heart2(2H-3) heart1(6H-1) heart1(6H-2) heart1(6H-3) heart2(6H-1) heart2(6H-2) heart2(6H-3) kidney1(0H-1) kidney1(0H-2) kidney1(0H-3) kidney2(0H-1) kidney2(0H-2) kidney2(0H-3) kidney2(0H-4) kidney1(2H-1) kidney1(2H-2) kidney1(2H-3) kidney2(2H-1) kidney2(2H-2) kidney2(2H-3) kidney1(6H-1) kidney1(6H-2) kidney1(6H-3) kidney2(6H-1) kidney2(6H-2) kidney2(6H-3) liver1(0H-1) liver1(0H-2) liver1(0H-3) liver2(0H-1) liver2(0H-2) liver2(0H-4) liver1(2H-1) liver1(2H-2) liver1(2H-3) liver2(2H-1) liver2(2H-2) liver2(2H-3) liver1(6H-1) liver1(6H-2) liver1(6H-3) liver2(6H-1) liver2(6H-2) liver2(6H-3) lung1(0H-1) lung1(0H-2) lung1(0H-3) lung2(0H-1) lung2(0H-2) lung2(0H-4) lung1(2H-1) lung1(2H-2) lung1(2H-3) lung2(2H-1) lung2(2H-2) lung2(2H-3) lung1(6H-1) lung1(6H-2) lung1(6H-3) lung2(6H-1) lung2(6H-2) lung2(6H-3) spleen1(0H-1) spleen1(0H-2) spleen1(0H-3) spleen2(0H-1) spleen2(0H-2) spleen2(0H-3) spleen2(0H-4) spleen1(2H-1) spleen1(2H-2) spleen1(2H-3) spleen2(2H-1) spleen2(2H-2) spleen2(2H-3) spleen1(6H-1) spleen1(6H-2) spleen1(6H-3) spleen2(6H-1) spleen2(6H-2) spleen2(6H-3)

Name	Sakamoto_SI_Table3 Description	including gene names, accession numbers, the nucleotide sequence printed on microarrays and relative log ratios. File	Sakamoto_SI_Table3.txt

Summary data text field: Field	Description Name ID blood1(0H-1) blood1(0H-2) blood1(0H-3) blood2(0H-1) blood2(0H-2) blood2(0H-3) blood2(0H-4) blood1(2H-1) blood1(2H-2) blood2(2H-1) blood2(2H-2) blood2(2H-3) blood1(6H-1) blood1(6H-2) blood1(6H-3) blood2(6H-1) blood2(6H-2) blood2(6H-3) brain1(0H-1) brain1(0H-2) brain1(0H-3) brain2(0H-1) brain2(0H-2) brain2(0H-3) brain2(0H-4) brain1(2H-1) brain1(2H-2) brain1(2H-3) brain2(2H-1) brain2(2H-2) brain2(2H-3) brain1(6H-1) brain1(6H-2) brain1(6H-3) brain2(6H-1) brain2(6H-2) brain2(6H-3) heart1(0H-1) heart1(0H-2) heart1(0H-3) heart2(0H-1) heart2(0H-2) heart2(0H-3) heart2(0H-4) heart1(2H-1) heart1(2H-2) heart1(2H-3) heart2(2H-1) heart2(2H-2) heart2(2H-3) heart1(6H-1) heart1(6H-2) heart1(6H-3) heart2(6H-1) heart2(6H-2) heart2(6H-3) kidney1(0H-1) kidney1(0H-2) kidney1(0H-3) kidney2(0H-1) kidney2(0H-2) kidney2(0H-3) kidney2(0H-4) kidney1(2H-1) kidney1(2H-2) kidney1(2H-3) kidney2(2H-1) kidney2(2H-2) kidney2(2H-3) kidney1(6H-1) kidney1(6H-2) kidney1(6H-3) kidney2(6H-1) kidney2(6H-2) kidney2(6H-3) liver1(0H-1) liver1(0H-2) liver1(0H-3) liver2(0H-1) liver2(0H-2) liver2(0H-4) liver1(2H-1) liver1(2H-2) liver1(2H-3) liver2(2H-1) liver2(2H-2) liver2(2H-3) liver1(6H-1) liver1(6H-2) liver1(6H-3) liver2(6H-1) liver2(6H-2) liver2(6H-3) lung1(0H-1) lung1(0H-2) lung1(0H-3) lung2(0H-1) lung2(0H-2) lung2(0H-4) lung1(2H-1) lung1(2H-2) lung1(2H-3) lung2(2H-1) lung2(2H-2) lung2(2H-3) lung1(6H-1) lung1(6H-2) lung1(6H-3) lung2(6H-1) lung2(6H-2) lung2(6H-3) spleen1(0H-1) spleen1(0H-2) spleen1(0H-3) spleen2(0H-1) spleen2(0H-2) spleen2(0H-3) spleen2(0H-4) spleen1(2H-1) spleen1(2H-2) spleen1(2H-3) spleen2(2H-1) spleen2(2H-2) spleen2(2H-3) spleen1(6H-1) spleen1(6H-2) spleen1(6H-3) spleen2(6H-1) spleen2(6H-2) spleen2(6H-3) blood brain heart kidney liver lung spleen

Name	Sakamoto_SI_Table4 Description	including gene names, accession numbers and relative log ratios. File	Sakamoto_SI_Table4.txt

Summary data text field: Field	Description Name ID blood1(0H-1) blood1(0H-2) blood1(0H-3) blood2(0H-1) blood2(0H-2) blood2(0H-3) blood2(0H-4) blood1(2H-1) blood1(2H-2) blood2(2H-1) blood2(2H-2) blood2(2H-3) blood1(6H-1) blood1(6H-2) blood1(6H-3) blood2(6H-1) blood2(6H-2) blood2(6H-3) brain1(0H-1) brain1(0H-2) brain1(0H-3) brain2(0H-1) brain2(0H-2) brain2(0H-3) brain2(0H-4) brain1(2H-1) brain1(2H-2) brain1(2H-3) brain2(2H-1) brain2(2H-2) brain2(2H-3) brain1(6H-1) brain1(6H-2) brain1(6H-3) brain2(6H-1) brain2(6H-2) brain2(6H-3) heart1(0H-1) heart1(0H-2) heart1(0H-3) heart2(0H-1) heart2(0H-2) heart2(0H-3) heart2(0H-4) heart1(2H-1) heart1(2H-2) heart1(2H-3) heart2(2H-1) heart2(2H-2) heart2(2H-3) heart1(6H-1) heart1(6H-2) heart1(6H-3) heart2(6H-1) heart2(6H-2) heart2(6H-3) kidney1(0H-1) kidney1(0H-2) kidney1(0H-3) kidney2(0H-1) kidney2(0H-2) kidney2(0H-3) kidney2(0H-4) kidney1(2H-1) kidney1(2H-2) kidney1(2H-3) kidney2(2H-1) kidney2(2H-2) kidney2(2H-3) kidney1(6H-1) kidney1(6H-2) kidney1(6H-3) kidney2(6H-1) kidney2(6H-2) kidney2(6H-3) liver1(0H-1) liver1(0H-2) liver1(0H-3) liver2(0H-1) liver2(0H-2) liver2(0H-4) liver1(2H-1) liver1(2H-2) liver1(2H-3) liver2(2H-1) liver2(2H-2) liver2(2H-3) liver1(6H-1) liver1(6H-2) liver1(6H-3) liver2(6H-1) liver2(6H-2) liver2(6H-3) lung1(0H-1) lung1(0H-2) lung1(0H-3) lung2(0H-1) lung2(0H-2) lung2(0H-4) lung1(2H-1) lung1(2H-2) lung1(2H-3) lung2(2H-1) lung2(2H-2) lung2(2H-3) lung1(6H-1) lung1(6H-2) lung1(6H-3) lung2(6H-1) lung2(6H-2) lung2(6H-3) spleen1(0H-1) spleen1(0H-2) spleen1(0H-3) spleen2(0H-1) spleen2(0H-2) spleen2(0H-3) spleen2(0H-4) spleen1(2H-1) spleen1(2H-2) spleen1(2H-3) spleen2(2H-1) spleen2(2H-2) spleen2(2H-3) spleen1(6H-1) spleen1(6H-2) spleen1(6H-3) spleen2(6H-1) spleen2(6H-2) spleen2(6H-3) blood brain heart kidney liver lung spleen

Name	Sakamoto_SI_Table6 Description	including gene names, accession numbers and relative log ratios. File	Sakamoto_SI_Table6.txt

Summary data text field: Field	Description Name ID blood1(0H-1) blood1(0H-2) blood1(0H-3) blood2(0H-1) blood2(0H-2) blood2(0H-3) blood2(0H-4) blood1(2H-1) blood1(2H-2) blood2(2H-1) blood2(2H-2) blood2(2H-3) blood1(6H-1) blood1(6H-2) blood1(6H-3) blood2(6H-1) blood2(6H-2) blood2(6H-3) brain1(0H-1) brain1(0H-2) brain1(0H-3) brain2(0H-1) brain2(0H-2) brain2(0H-3) brain2(0H-4) brain1(2H-1) brain1(2H-2) brain1(2H-3) brain2(2H-1) brain2(2H-2) brain2(2H-3) brain1(6H-1) brain1(6H-2) brain1(6H-3) brain2(6H-1) brain2(6H-2) brain2(6H-3) heart1(0H-1) heart1(0H-2) heart1(0H-3) heart2(0H-1) heart2(0H-2) heart2(0H-3) heart2(0H-4) heart1(2H-1) heart1(2H-2) heart1(2H-3) heart2(2H-1) heart2(2H-2) heart2(2H-3) heart1(6H-1) heart1(6H-2) heart1(6H-3) heart2(6H-1) heart2(6H-2) heart2(6H-3) kidney1(0H-1) kidney1(0H-2) kidney1(0H-3) kidney2(0H-1) kidney2(0H-2) kidney2(0H-3) kidney2(0H-4) kidney1(2H-1) kidney1(2H-2) kidney1(2H-3) kidney2(2H-1) kidney2(2H-2) kidney2(2H-3) kidney1(6H-1) kidney1(6H-2) kidney1(6H-3) kidney2(6H-1) kidney2(6H-2) kidney2(6H-3) liver1(0H-1) liver1(0H-2) liver1(0H-3) liver2(0H-1) liver2(0H-2) liver2(0H-4) liver1(2H-1) liver1(2H-2) liver1(2H-3) liver2(2H-1) liver2(2H-2) liver2(2H-3) liver1(6H-1) liver1(6H-2) liver1(6H-3) liver2(6H-1) liver2(6H-2) liver2(6H-3) lung1(0H-1) lung1(0H-2) lung1(0H-3) lung2(0H-1) lung2(0H-2) lung2(0H-4) lung1(2H-1) lung1(2H-2) lung1(2H-3) lung2(2H-1) lung2(2H-2) lung2(2H-3) lung1(6H-1) lung1(6H-2) lung1(6H-3) lung2(6H-1) lung2(6H-2) lung2(6H-3) spleen1(0H-1) spleen1(0H-2) spleen1(0H-3) spleen2(0H-1) spleen2(0H-2) spleen2(0H-3) spleen2(0H-4) spleen1(2H-1) spleen1(2H-2) spleen1(2H-3) spleen2(2H-1) spleen2(2H-2) spleen2(2H-3) spleen1(6H-1) spleen1(6H-2) spleen1(6H-3) spleen2(6H-1) spleen2(6H-2) spleen2(6H-3)