NGS Analysis, Program List


 * BFAST
 * http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page


 * Maq
 * http://maq.sourceforge.net/


 * Bowtie
 * http://bowtie-bio.sourceforge.net/index.shtml


 * BWA
 * http://bio-bwa.sourceforge.net/


 * LAST
 * http://last.cbrc.jp/


 * SRMA
 * http://sourceforge.net/apps/mediawiki/srma/index.php?title=Main_Page


 * SAMtools
 * http://samtools.sourceforge.net/


 * GATK
 * http://www.broadinstitute.org/gsa/wiki/index.php/Downloading_the_GATK


 * ABySS
 * http://www.bcgsc.ca/platform/bioinfo/software/abyss


 * SGA
 * http://www.ohloh.net/p/sga


 * ALLPATHS-LG
 * http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12